PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B0EXC
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 440aa    MW: 49382.2 Da    PI: 6.8796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B0EXCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.61.6e-30106210199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Araip.B0EXC 106 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGlGElYRHRL 203
                  89***************************9555568889************************************************76688888888 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Araip.B0EXC 204 YIDWRRR 210
                  8888886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-4196211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30103211IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-26104193No hitNo description
PROSITE profilePS5086313.831106211IPR003340B3 DNA binding domain
PfamPF023625.0E-28106210IPR003340B3 DNA binding domain
SMARTSM010192.0E-23106211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEEEVKGYSD SREEEEEEEE DEAAEIIPIP NTRQETNSSG NRLQQQQDTA VAPNFSQRKQ  60
LDLMELSLGS GSSKDDRNWQ QGGGGGGMVG SCSSSSSEAV EKEHMFDKVV TPSDVGKLNR  120
LVIPKQHAEK YFPLDSSSND KGLLLNFEDR NGKLWRFRYS YWNSSQSYVM TKGWSRFVKE  180
KKLDAGDIVS FHRGLGELYR HRLYIDWRRR PDHPPPDPSA SLISPFFLPN HYSAAITWGA  240
GGRFYSLPSP TPPPRHHHFH HHQHHPLATN YNTHMYGFHH HPGAATGTSH HLLSGYNDQQ  300
LNSGSPGPLY YLRSPPSMSI VDPNLHQERG TAIAPMIIDS VPVAHHHHQQ QQHQHGVVPN  360
SSNFDSTNTA GKRLRLFGVN MECASSSSSS PAEDHSHVAM SSSLPSSSRF GDQRGDTTTT  420
TPSVLFDLDP SLQYHHHHRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4710321011117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205813.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_016205814.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_016205815.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotO827994e-76NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLK7MEN51e-124K7MEN5_SOYBN; Uncharacterized protein
STRINGGLYMA07G05381.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-66B3 family protein